Search a title or topic

Over 20 million podcasts, powered by 

Player FM logo
Artwork

Content provided by Vasanth Sarathy & Laura Hagopian, Vasanth Sarathy, and Laura Hagopian. All podcast content including episodes, graphics, and podcast descriptions are uploaded and provided directly by Vasanth Sarathy & Laura Hagopian, Vasanth Sarathy, and Laura Hagopian or their podcast platform partner. If you believe someone is using your copyrighted work without your permission, you can follow the process outlined here https://podcastplayer.com/legal.
Player FM - Podcast App
Go offline with the Player FM app!

#23 - Designing Antivenom With Diffusion Models

20:55
 
Share
 

Manage episode 524892799 series 3678189
Content provided by Vasanth Sarathy & Laura Hagopian, Vasanth Sarathy, and Laura Hagopian. All podcast content including episodes, graphics, and podcast descriptions are uploaded and provided directly by Vasanth Sarathy & Laura Hagopian, Vasanth Sarathy, and Laura Hagopian or their podcast platform partner. If you believe someone is using your copyrighted work without your permission, you can follow the process outlined here https://podcastplayer.com/legal.

What if the future of antivenom didn’t come from horse serum, but from AI models that shape lifesaving proteins out of noise?

In this episode, we explore how diffusion models, powerful tools from the world of AI, are transforming the design of antivenoms, particularly for some of nature’s deadliest neurotoxins. Traditional antivenom is costly, unstable, and can provoke serious immune reactions. But for toxins like those from cobras, mambas, and sea snakes that are potent yet hard to target with immune responses, new strategies are needed.

We begin with the problem: clinicians face high-risk toxins and a shortage of effective, safe treatments. Then we dive into the breakthrough: using diffusion models like RosettaFold Diffusion to generate novel protein binders that precisely fit the structure of snake toxins. These models start with random shapes and iteratively refine them into stable, functional proteins, tailored to neutralize the threat at the molecular level.

You’ll hear how these designs were screened for strength, specificity, and stability, and how the top candidates performed in mouse studies—protecting respiration and holding promise for more scalable, less reactive therapies. Beyond venom, this approach hints at a broader shift in drug development: one where AI accelerates discovery by reasoning in shape, not just sequence.

We wrap by looking ahead at the challenges in manufacturing, regulation, and real-world validation, and why this shape-first design mindset could unlock new frontiers in precision medicine.

If you’re into biotech with real-world impact, subscribe, share, and leave a review to help more curious listeners discover the show.

Reference:

Novel Proteins to Neutralize Venom Toxins
José María Gutiérrez
New England Journal of Medicine (2025)

Credits:

Theme music: Nowhere Land, Kevin MacLeod (incompetech.com)
Licensed under Creative Commons: By Attribution 4.0
https://creativecommons.org/licenses/by/4.0/

  continue reading

Chapters

1. Venom Meets Modern AI (00:00:00)

2. Hosts And Wilderness Medicine Context (00:00:19)

3. How Traditional Antivenom Is Made (00:01:31)

4. Limits: Cost, Safety, Immunogenicity (00:03:58)

5. Three-Finger Toxins And Paralysis (00:06:05)

6. Why Shape Beats Sequence (00:08:15)

7. From AlphaFold To RF Diffusion (00:10:02)

8. How Diffusion Models Design Proteins (00:12:32)

9. Constraining Shape For Binding (00:15:20)

10. Mouse Results And Stability (00:17:14)

11. Broader Promise And Next Steps (00:19:12)

12. Closing And Sign-Off (00:20:40)

23 episodes

Artwork
iconShare
 
Manage episode 524892799 series 3678189
Content provided by Vasanth Sarathy & Laura Hagopian, Vasanth Sarathy, and Laura Hagopian. All podcast content including episodes, graphics, and podcast descriptions are uploaded and provided directly by Vasanth Sarathy & Laura Hagopian, Vasanth Sarathy, and Laura Hagopian or their podcast platform partner. If you believe someone is using your copyrighted work without your permission, you can follow the process outlined here https://podcastplayer.com/legal.

What if the future of antivenom didn’t come from horse serum, but from AI models that shape lifesaving proteins out of noise?

In this episode, we explore how diffusion models, powerful tools from the world of AI, are transforming the design of antivenoms, particularly for some of nature’s deadliest neurotoxins. Traditional antivenom is costly, unstable, and can provoke serious immune reactions. But for toxins like those from cobras, mambas, and sea snakes that are potent yet hard to target with immune responses, new strategies are needed.

We begin with the problem: clinicians face high-risk toxins and a shortage of effective, safe treatments. Then we dive into the breakthrough: using diffusion models like RosettaFold Diffusion to generate novel protein binders that precisely fit the structure of snake toxins. These models start with random shapes and iteratively refine them into stable, functional proteins, tailored to neutralize the threat at the molecular level.

You’ll hear how these designs were screened for strength, specificity, and stability, and how the top candidates performed in mouse studies—protecting respiration and holding promise for more scalable, less reactive therapies. Beyond venom, this approach hints at a broader shift in drug development: one where AI accelerates discovery by reasoning in shape, not just sequence.

We wrap by looking ahead at the challenges in manufacturing, regulation, and real-world validation, and why this shape-first design mindset could unlock new frontiers in precision medicine.

If you’re into biotech with real-world impact, subscribe, share, and leave a review to help more curious listeners discover the show.

Reference:

Novel Proteins to Neutralize Venom Toxins
José María Gutiérrez
New England Journal of Medicine (2025)

Credits:

Theme music: Nowhere Land, Kevin MacLeod (incompetech.com)
Licensed under Creative Commons: By Attribution 4.0
https://creativecommons.org/licenses/by/4.0/

  continue reading

Chapters

1. Venom Meets Modern AI (00:00:00)

2. Hosts And Wilderness Medicine Context (00:00:19)

3. How Traditional Antivenom Is Made (00:01:31)

4. Limits: Cost, Safety, Immunogenicity (00:03:58)

5. Three-Finger Toxins And Paralysis (00:06:05)

6. Why Shape Beats Sequence (00:08:15)

7. From AlphaFold To RF Diffusion (00:10:02)

8. How Diffusion Models Design Proteins (00:12:32)

9. Constraining Shape For Binding (00:15:20)

10. Mouse Results And Stability (00:17:14)

11. Broader Promise And Next Steps (00:19:12)

12. Closing And Sign-Off (00:20:40)

23 episodes

All episodes

×
 
Loading …

Welcome to Player FM!

Player FM is scanning the web for high-quality podcasts for you to enjoy right now. It's the best podcast app and works on Android, iPhone, and the web. Signup to sync subscriptions across devices.

 

Copyright 2025 | Privacy Policy | Terms of Service | | Copyright
Listen to this show while you explore
Play