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Introducing Profluent’s E1: Retrieval-augmentation for protein engineering

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Manage episode 520069420 series 3275735
Content provided by Nathan Benaich (Air Street Capital). All podcast content including episodes, graphics, and podcast descriptions are uploaded and provided directly by Nathan Benaich (Air Street Capital) or their podcast platform partner. If you believe someone is using your copyrighted work without your permission, you can follow the process outlined here https://podcastplayer.com/legal.

Understanding how protein sequence encodes structure and function remains one of the central challenges in the life sciences. Yet most protein language models still treat each sequence as an isolated datapoint. This forces the entire burden of evolutionary context into model parameters, which leads to blind spots in underrepresented families and amplifies the biases of sequence databases. Profluent’s new E1 family demonstrates that this constraint is no longer necessary. Retrieval augmentation, a technique that transformed natural language processing, is now beginning to reshape protein modeling by allowing models to incorporate evolutionary information at the moment of inference rather than storing it all in weights.

  continue reading

100 episodes

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iconShare
 
Manage episode 520069420 series 3275735
Content provided by Nathan Benaich (Air Street Capital). All podcast content including episodes, graphics, and podcast descriptions are uploaded and provided directly by Nathan Benaich (Air Street Capital) or their podcast platform partner. If you believe someone is using your copyrighted work without your permission, you can follow the process outlined here https://podcastplayer.com/legal.

Understanding how protein sequence encodes structure and function remains one of the central challenges in the life sciences. Yet most protein language models still treat each sequence as an isolated datapoint. This forces the entire burden of evolutionary context into model parameters, which leads to blind spots in underrepresented families and amplifies the biases of sequence databases. Profluent’s new E1 family demonstrates that this constraint is no longer necessary. Retrieval augmentation, a technique that transformed natural language processing, is now beginning to reshape protein modeling by allowing models to incorporate evolutionary information at the moment of inference rather than storing it all in weights.

  continue reading

100 episodes

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